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Departments >> Faculty of Engineering >> Department of Computer Science >> Chair of Computer Science 5 (Pattern Recognition) >>
Organ Segmentation for Perfusion CT

This research project focuses on the development and evaluation of methods for abdominal organ segmentation in perfusion Computed Tomography (Perfusion CT) images.

Over the last years, perfusion imaging has become an important diagnostic tool for stroke and brain tumor patients. In the context of stroke, perfusion is reduced for affected areas, whereas in the context of tumors, perfusion is increased, a result of the tumor neovascularization. In recent years, research has focused on perfusion analysis for abdominal organs, too.

In perfusion CT, a contrast agent is injected into the blood supply for the region of interest and its temporal spreading is analyzed.

Image processing methods are required in order to automatically determine the region of the organ to be studied. This is a challenging task, as different abdominal organs exhibit similar intensities in CT acquisitions, making it difficult to distinguish between individual tissue classes. Additionally, organ movements and deformations, for example due to respiration, have to be compensated through image registration in order to obtain an accurate perfusion analysis.

The goal of this project is to develop image processing methods which are fast, accurate, and robust, and require only a minimum amount of user interaction, in order to meet the requirements for clinical work flows. This research project is supported by our industrial partner Siemens Healthcare.

Project manager:
Prof. Dr.-Ing. Joachim Hornegger, Dr.-Ing. Grzegorz Soza (Siemens)

Project participants:
Dipl.-Inf. Andreas Wimmer

Keywords:
Perfusion CT; organ segmentation; registration

Duration: 1.6.2006 - 31.12.2009

Sponsored by:
Siemens Healthcare

Contact:
Wimmer, Andreas
E-Mail: andreas.wimmer@informatik.uni-erlangen.de
Publications
Maier, Florian ; Wimmer, Andreas ; Soza, Grzegorz ; Kaftan, Jens N. ; Fritz, Dominik ; Dillmann, Rüdiger: Automatic Liver Segmentation using the Random Walker Algorithm. In: GMDS ; BVMI ; IEEE (Org.) : Bildverarbeitung für die Medizin 2008 - Algorithmen, Systeme, Anwendungen (Bildverarbeitung für die Medizin 2008 Berlin 06.-08.04.2008). 2008, pp k.a..
Eibenberger, Eva ; Borsdorf, Anja ; Wimmer, Andreas ; : Edge-Preserving Denoising for Segmentation in CT-Images. In: Tolxdorff, Thomas ; Braun, Jürgen ; Deserno, Thomas M. ; Handels, Heinz ; Horsch, Alexander ; Meinzer, Hans-Peter (Ed.) : Bildverarbeitung für die Medizin 2008 - Algorithmen, Systeme, Anwendungen (Bildverarbeitung für die Medizin 2008 - Algorithmen, Systeme, Anwendungen Berlin 06.-08.04.2008). Berlin : Springer, 2008, pp 257-261. - ISBN 978-3-540-78639-9
Wimmer, Andreas ; Soza, Grzegorz ; : Implicit Active Shape Model Employing Boundary Classifier. In: Ejiri, Masakazu ; Kasturi, Rangachar ; Sanniti di Baja, Gabriella (Ed.) : Proceedings of the 19th International Conference on Pattern Recognition (19th International Conference on Pattern Recognition Tampa, USA 08.12.2008 - 11.12.2008). Tampa : Omnipress, 2008, pp no pagination. - ISBN 978-1-4244-2175-6
Wimmer, Andreas ; Soza, Grzegorz ; : Two-stage Semi-automatic Organ Segmentation Framework using Radial Basis Functions and Level Sets. In: Heimann, Tobias ; Styner, Martin ; van Ginneken, Bram (Ed.) : 3D Segmentation in the Clinic - A Grand Challenge MICCAI 2007 Workshop Proceedings (10th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 Brisbane, QLD, Australien 29.10.2007 - 02.11.2007). 2007, pp 179-188.
Wimmer, Andreas ; Soza, Grzegorz ; : A Generic Probabilistic Active Shape Model for Organ Segmentation. In: Yang, Guang-Zhong ; Hawkes, David ; Rueckert, Daniel ; Noble, Alison ; Taylor, Chris (Ed.) : Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009) London, UK (Imperial Collge) 20.09.2009 - 24.09.2008). Vol. LNCS 5762. Berlin Heidelberg : Springer, 2009, pp 26-33. - ISBN 3-642-04270-8
Heimann, Tobias ; van Ginneken, Bram ; Styner, Martin ; Arzhaeva, Yulia ; Aurich, Volker ; Bauer, Christian ; Beck, Andreas ; Becker, Christoph ; Beichel, Reinhard ; Bekes, György ; Bello, Fernando ; Binnig, Gerd ; Bischof, Horst ; Bornik, Alexander ; Cashman, Peter M. M. ; Chi, Ying ; Córdova, Andrés ; Dawant, Benoit M. ; Fidrich, Márta ; Furst, Jacob ; Furukawa, Daisuke ; Grenacher, Lars ; ; Kainmüller, Dagmar ; Kitney, Richard I. ; Kobatake, Hidefumi ; Lamecker, Hans ; Lange, Thomas ; Lee, Jeongjin ; Lennon, Brian ; Li, Rui ; Li, Senhu ; Meinzer, Hans-Peter ; Németh, Gábor ; Raicu, Daniela S. ; Rau, Anne-Mareike ; van Rikxoort, Eva ; Rousson, Mikael ; Ruskó, László ; Saddi, Kinda A. ; Schmidt, Günter ; Seghers, Dieter ; Shimizu, Akinobu ; Slagmolen, Pieter ; Sorantin, Erich ; Soza, Grzegorz ; Susomboon, Ruchaneewan ; Waite, Jonathan M. ; Wimmer, Andreas ; Wolf, Ivo: Comparison and Evaluation of Methods for Liver Segmentation from CT datasets. In: IEEE Transactions on Medical Imaging 28 (2009), No. 8, pp 1251-1265
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